Webinar – Rare & Null Allele Detection with HLA Twin™

Are you interested in Orthogonal Bioinformatic Validation?  

 Watch this latest webinar presentation on HLA Twin™ – Rare & Null Allele Detection

 

Date: Thursday, 11th December, 2014
Time: 12:00–1pm EST (6–7pm CET)
A live Q&A session will follow the presentation, offering you the opportunity to put forward any questions. Following registration, you will receive a confirmation email containing information for joining this event. This Webinar will be recorded and material is available on request.

 Webinar Content

  • Introduction to Holotype HLA
  • HLA Twin Genotyping Software Overview
  • Null Allele Detection (with HLA Twin)
  • Handling Rare Alleles (with HLA Twin)
  • Summary & Benefits
  • Live Q&A Session
Presenters
Tim Hague (CEO)
A passionate biotechnology executive combining a science education with a strong IT background. Tim joined Omixon as a Software Architect before swiftly taking on the role of CTO, a position he held for more than 3 years. In 2013 he became Omixon’s CEO, adding world-wide responsibility for sales, marketing, HR and finances to his existing leadership of research and development. Before joining Omixon, he accumulated 15 years of software engineering and design expertise as Architect/Design Lead at Lufthansa Systems, Technical Consultant at iE and Technical Team Leader at IBM, among others. Tim received a BSc in Genetics from Nottingham University and an MSc in Information Systems Design from the University of Westminster.
Craig Funnell (Director, Sales & Marketing)
Experienced international Sales, Business Development and Marketing Executive. Before moving to Life Science, Craig spent almost 20 years in the Professional Services sector, holding regional management positions with Aon Risk Solutions EMEA (Europe Middle East & Africa). Since 2010 Craig has been a Management Consultant, involved with a number of term projects; Information Technology, Engineering, Hi Tech and Life Sciences – including; Interim CEO of Dyntell Software, Interim CEO of ThalesNano Nanotechnology Inc, consultant for DAVID Spine Clinic and ChemAxon Cheminformatics. Craig initially joined Omixon with a Sales & Marketing consultancy role, and now heads up our worldwide Revenue Generation efforts.
Agnes Pasztor (Customer Support Manager)
Agnes has vocational training in Economical Informatics and is currently studying towards a Bsc in Biology. Experienced software tester with background in banking environments and testing automation. At Omixon, Agnes is responsible for customer support and application testing. Live Q&A session will be presented by her.

Save your seat and register here

Patient Stratification in Clinical Trials

When carrying out clinical trials, one of the most important logistical and statistical challenges is ensuring that your data accurately reflects the population you are setting out to study. None of us has the resources to test a drug on the entire human race, but if we want to have confidence in the results then we need to test it on a group that reflects the drug’s potential patients.

Of course a clinical trial of a drug for use on the elderly only needs results that reflect its effects on the elderly, and the same for any treatment with a specific patient pool. But whatever the group of patients you are aiming for, you want to ensure that the results accurately predict what will happen once the drug goes into use. This is where patient stratification comes in.

Patient stratification

Stratification is the division of your potential patient group into subgroups, also referred to as ‘strata’ or ‘blocks’. Each strata represents a particular section of your patient population.

For example, patients could be divided up according to age, gender, ethnicity, social background, medical history, or any other factor that you consider relevant.

Groups of subjects are then included in the clinical trial to match each of these groups within the patient population. So a study into the intersection of genetics & medicine that is immunotherapy might need to include groups from different ethnic backgrounds and genders, to take into account genetic variations.

With the strata established, different approaches can be taken to identify suitable test subjects.

Stratified randomization

Stratified random sampling, or stratified randomization, uses random selection within each strata in an attempt to ensure that no bias, deliberate or accidental, interferes with the representative nature of the patient sample.

Potential test subjects for a strata are identified, and those to be used in the trial are picked at random from that group. Whatever search tool you have used to identify possible test subjects, you can use your data & software to randomise your choices.

Stratified randomization is often the most straightforward way to produce an accurate sample.

Stratified proportionate sampling

Clinical trial services also make use of stratified proportionate sampling to ensure representative tests.

Stratified proportionate sampling, which can be combined with randomized stratification, is a way of ensuring that the test population represents the wider population without the need for further statistical manipulation. The percentage of subjects taken from each strata is proportionate to the percentage of the population in that strata. So if seventy percent of the likely patients are female then seventy percent of the test subjects would be female, and so on for other stratification factors.

Proportionate sampling is not necessary to ensure valid results, as the impact of different strata on the overall picture can be factored in mathematically. But it removes the need for that extra statistical step.

Disproportionate stratification

Disproportionate sampling is an approach to stratification in situations where a particular strata represents a very small proportion of the population, and so testing them proportionately might not provide valid results.

For example, if a test is set up using a thousand subjects, and one percent of the target population is over sixty, then a proportionate sample would include only ten test subjects over sixty. But while the test population as a whole might be large enough to draw reliable conclusions about the impact of the drug, the small sample in that age group would prevent reliable conclusions about its impact on them. Perhaps the researchers might be particularly concerned about the effect of their drug on those reaching retirement, or just want to make sure that each strata is properly tested. In that case they could take a disproportionate sample from the over sixty group – say one hundred subjects – and then manipulate their data so that those subjects’ results only had a one percent impact on the overall conclusions.

Quota vs convenience

However sophisticated the alignment search tool you use on your genetic data, the results may not be useful if you haven’t used the right pool of test subjects from the start. This sort of problem is why patient stratification, and the use of randomization within it, is so vital for researchers.

Taking a test sample based on who is easily available can save on cost and effort, but it fundamentally undermines the results. If you want your research to be accurate, relevant and usable in medicine then you need to apply stratification, and to have the right tools available to analyse the results.

Here to help

Omixon is here to help with that analysis. High resolution HLA typing may help select the patient population that is more likely to respond to a certain treatment. For example, the selection of certain HLA genotypes in clinical studies for metastatic colorectal cancer ensures that only the most likely respondent are included thus reducing the number patients and maximizing your chances to seeing any effect of the drug under investigation. Our software, probably the most accurate in the field, ensures that your data is quickly turned into usable results. So put your effort into getting the sample right, and let us take the effort out of processing it afterwards.

Omixon Signs Letter of Intent with Pronto Diagnostics

At Omixon we are working hard to expand our customer base. Our Holotype HLA kit is already making an impact on the HLA typing market, and we are regularly contacted by companies proposing to partner with us as local distributors. For example, we have recently signed a letter of intent with Pronto Diagnostics and are underway with arranging exclusive distribution for Israel.

pronto_diagnosticsPronto Diagnostics is a leading, Tel-Aviv-based provider of molecular diagnostics products and services with extensive experience in genetic analysis. We are currently defining the terms and conditions of this partnership and we are very confident that Pronto Diagnostics will be an ideal partner for marketing our HLA typing kits in one of the most technologically advanced countries in the world.

For more information about our distributors, click here…

Omixon Celebrates a Frighteningly Successful ASHI 2014 in Denver

Omixon took a team of scary mad scientists, zombie marketeers, and bloodsucking vampires (sales people) to Denver, Colorado, to the 40th Anniversary Meeting for the American Society of Histocompatibility and Immunogenetics (ASHI). Joining the team were a couple of respectable Omixon board members, who were neither undead nor scary (except for the amount of life blood they were able to consume, which was truly frightening).

Tim and Craig’s first experience of Denver was Zombie Night on 16th Street Mall.  As they had been travelling for 20 hours straight at this point, nobody even noticed that they were not actually in costume.

The event was frighteningly successful, with both the HLA Twin ‘Novel Allele Discovery’ Workshop and the Holotype HLA Luncheon oversubscribed, with the Omixon booth occupied with willing victims from dawn to dusk, and with the Omixon scariness featuring in five posters and three talks.  The Luncheon event saw the launch of Omixon’s new Holotype HLA combined assay and software product, including three guest speakers from Early Access Program labs – Laurine Bow from Yale, Julio Delgado from ARUP and Medhat Askar from Cleveland Clinic – plus speeches from Dimitri Monos (from The Children’s Hospital of Philadelphia) and Peter Meintjes and Tim Hague (both Omixon).

In keeping with the Halloween theme, the Omixon team remained awake (pretty much) all night every night, were able to avoid daylight by remaining underground in the Exhibition hall, and were very pleased to be able to infect many new fledgling vampires with enthusiasm for Holotype HLA.

 

SeqGene is Omixon’s New Distributor

Omixon is pleased to announce the signature of a Distribution Agreement with SeqGene, based in Taipei City, Taiwan. The agreement is effective 1st October, 2014.

About SeqGene:

SeqGene is a molecular biology company. They specialize in next generation sequencing (NGS)-based services for oncology studies and HLA typing. The company is a recent spin off of the National University of Taiwan and its management team has several years of commercial experience and track record in the NGS field.
SeqGene’s sequencing platform is based on Illumina’s MiSeq and the company has established close contacts with blood banks and stem cells centres, as well as international collaborations.
There are currently interesting opportunities in the HLA field in Taiwan. Alongside the traditional activities related to transplantation, there are a number of ongoing genetic screenings supported by the Taiwanese National Health Service. One example is the nationwide screening for HLA-B*1502, which is a known drug hypersensitivity factor.

Building on this molecular biology expertise, SeqGene has now agreed a partnership with Omixon for the exclusive distribution of Omixon’s HLA typing software in Taiwan.

 

For more informations about our distributors, click here…