Omixon Launches Holotype HLA™ for NGS-based HLA Genotyping

Omixon announces the launch of Omixon Holotype HLA™ – a combination Assay and Software product that leverages the power of Next Generation Sequencing (NGS), for use on the Illumina® MiSeq sequencing platform. The assay and software have been optimized through cohesive collaboration with the Monos lab at The Children’s Hospital of Philadelphia (CHOP) and will include a new software product, Omixon HLA Twin™, that features two different algorithms for orthogonal validation by data analysis and the most accurate high-resolution genotyping available.

“This new approach sets the stage for the thorough and accurate characterization of the HLA genes,” says Professor Dimitri Monos, Director of the Immunogenetics Laboratory in the Department of Pathology and Laboratory Medicine at CHOP. “These genes are critical for any antigen-specific immune response and found to be very important for transplantation, have been associated with many autoimmune diseases, play a critical role in infectious diseases and most recently their relevance to pharmacogenomics has been demonstrated, as they influence immunological reactions to particular medications. It is very likely that this new technology will provide additional insights that may further elucidate the role of these genes/molecules in each of these disciplines and beyond in rather surprising and unpredictable ways.” The assay provides targeted amplification and library preparation reagents for the whole gene coverage of HLA-A, B, C and DQB1, and partial coverage for HLA-DRB1.

The resulting Illumina data provides even and deep coverage, allowing Omixon’s new HLA Twin software to fully resolve phase for both alleles at each locus and provide completely characterized novel allele sequences. Professor Monos says, “We are delighted with the Omixon HLA Twin software and have been particularly impressed with the modifications to the software for handling our protocol whereby all amplified HLA loci are pooled together and processed as a single library decreasing cost and saving time without compromising accuracy of HLA genotyping.” An important feature of Omixon HLA Twin is the ability to resolve complex genotypes with high accuracy to the third or even fourth field level.

Dr. Attila Berces, Founder and Chairman at Omixon says, “Professor. Monos’ protocol is as much art as it is science. It’s wonderfully simple and a huge leap forward in terms of usability for HLA labs looking to keep pace with the latest technologies.” Similarly, he notes that “At Omixon, we have developed assay-specific features within the software that gives scientists the highest possible confidence in their genotyping results, a transparent system of notification flags to assist a clinical analyst with difficult to resolve alleles, and the benefit of two independent algorithms for analyzing the sequence data.” Omixon’s software implements two algorithms that are not just different, but orthogonal in their approach to resolving HLA genotypes, providing the only turnkey solution for analyzing HLA genotypes from NGS data.

The adoption of Omixon Holotype HLA by labs internationally provides the opportunity to improve transplantation outcomes through a more refined assessment of donor compatibility, and will expedite the donor selection process from bone marrow registries. Dr. Berces notes that “Bone marrow transplantation in particular is one of the most expensive medical procedures with high mortality rates. Omixon’s new product should help to better understand the genetic factors of successful transplantation and thus improve not only patient outcome but economic efficiency of the procedure”. In addition to its role in transplantation, Omixon Holotype HLA is an advanced tool for disease association studies in immunology and infectious diseases, including therapeutic response studies for immunotherapeutics and adverse drug response studies.

Invitation to the Early Access Program for Holotype HLA

Omixon is making Holotype HLA available for purchase through an Early Access Program (EAP) to selected HLA laboratories across the globe that are planning to migrate to NGS-based HLA genotyping. Please contact Omixon’s CEO, Tim Hague directly (tim.hague@omixon.com) to enquire about the terms of participation. EAP members will be accepted until the maximum capacity is reached.

Contact sales@omixon.com, or visit our Holotype HLA™ product page for more information

Read more on PRWeb…

Omixon Celebrates a Successful EFI 2014

Omixon took a team of 8 to the 28th EFI (European Histocompatibility and Immunogenetics) Conference, held in Stockholm.  Omixon’s “A Team” of defenders (science nerds), midfielders (marketing bods) and strikers (sales weenies) were superbly captained by the indefatigable Craig Funnell (Director of Sales and Marketing), and brought super-sub Attila Berces (Founder and Chairman) and water bottle carrier Tim Hague (CEO) along for the ride.

There were over 1200 attendees altogether from all over the world, and much of the discussion centred around HLA Typing using NGS data.  There was a huge amount of interest in the recent collaboration announced between Omixon and the Children’s Hospital of Philadelphia, and the team at the Omixon booth were rushed off their feet dealing with enquiries about the impending Illumina-based, combination Assay and Software HLA product and demonstrating the Omixon HLA Typing software.  There was also keen interest in a poster describing elements of the Omixon HLA algorithms.

CEO Tim Hague commented afterwards: “We were humbled and gratified by such a positive response to our collaboration with CHOP. We’re very excited about the possibilities for our new HLA kit product range. We also drank too much wine at the One Lambda party.”

Visit the EFI website to read more…

Omixon Target Release Notes 1.9.1

We are happy to let you know that a new version of Omixon Target is now available, including updated features and further improvements.

Feel free to download the new version using the plugin on our website. When installing, select the ‘upgrade’ option to renew an existing installation

If you have the server version of Omixon Target, our support team will contact you shortly with an update message.

Major New Features (HLA typing module)

  • Credit re-usability – samples analysed with the new version can be re-analysed indefinitely with different sets of parameters, one sample ultimately costs 1 credit
    • Restriction – currently reanalysis will overwrite existing results, so these should be exported beforehand
    • Restriction – there is currently no comparison of results between two analyses, this feature is coming soon
  • Improved ambiguity handling in HLA typing – in some cases this will lead to more ambiguity in the results

Minor Improvements (HLA typing module)

  • Aligner performance improved
  • Improved custom candidate management in the Genome Browser
  • Assignment of imbalanced candidates
  • Export-import now supports every alignment method
  • New pager for easier task sorting in Process Manager
  • Updated Help
  • Bugfixes and other improvements

As usual, all feedback and comments are welcome.

Sincerely,

The Omixon Team

Technical Assistance: support@omixon.com
Product Information: sales@omixon.com